MLOC_50162 FPKM values

FPKM by TreatmentFPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.


Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.267711.707613.52550
LEAShoots from the seedlings (10 cm shoot stage)25.35444.569837.547760
INF1Young developing inflorescences (5mm)5.900467.435947.195920
INF2Developing inflorescences (1-1.5 cm)3.980332.97522.512520
ROORoots from the seedlings (10 cm shoot stage)94.106257.868450.03230
NODDeveloping tillers at six leaf stage, 3rd internode1866.81-1518.8470
CAR5Developing grain, bracts removed (5 DPA)7.597676.097145.135430
CAR15Developing grain, bracts removed (15 DPA)5.760693.199058.639870



CDS Structure of MLOC_50162






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_50162.7
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371766NoneNoneNoneNone
MLOC_50162.7CUST_2761_PI427708080AvailableNonecontig_355646 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g28330.4 -1 0.0 1565 778/817 (95%) 13103.m03307 protein sucrose synthase, putative, expressed
TAIR PP10 AT3G43190.1 -1 0.0 1203 598/808 (74%) | Symbols: SUS4, ATSUS4 | sucrose synthase 4 | chr3:15179204-15182577 REVERSE LENGTH=808