MLOC_50140 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6349432.404072.243071.78587
LEAShoots from the seedlings (10 cm shoot stage)4.17763.705822.655112.88892
INF1Young developing inflorescences (5mm)3.102513.638013.730312.77715
INF2Developing inflorescences (1-1.5 cm)4.231734.116583.254114.09116
ROORoots from the seedlings (10 cm shoot stage)0.483492.124821.616362.05109
NODDeveloping tillers at six leaf stage, 3rd internode1.537423.36972.846869.95183
CAR5Developing grain, bracts removed (5 DPA)2.208571.886252.24091.89406
CAR15Developing grain, bracts removed (15 DPA)0.729350.7397210.6727331.57238



CDS Structure of MLOC_50140






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_50140.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_50140.1CUST_17710_PI427708080AvailableAvailablecontig_355276 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g49390.1 +3 0.0 1249 756/1527 (50%) 13106.m05282 protein NBS-LRR disease resistance protein, putative, expressed
TAIR PP10 AT3G14470.1 +3 5e-76 278 256/904 (28%) NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054