MLOC_50084 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.109312.713413.834211.341
LEAShoots from the seedlings (10 cm shoot stage)12.804116.619517.392112.9018
INF1Young developing inflorescences (5mm)19.803923.383122.873216.8091
INF2Developing inflorescences (1-1.5 cm)26.971225.520423.897426.0889
ROORoots from the seedlings (10 cm shoot stage)14.665611.432514.717914.32
NODDeveloping tillers at six leaf stage, 3rd internode11.074816.762716.460251.7618
CAR5Developing grain, bracts removed (5 DPA)9.6370911.83739.996999.5667
CAR15Developing grain, bracts removed (15 DPA)9.984278.472129.6596819.7807



CDS Structure of MLOC_50084






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_50084.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_50084.1CUST_12645_PI427708083AvailableAvailablecontig_354085 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g47550.1 -2 5e-41 148 88/105 (84%) 13105.m05041 protein ANTH/ENTH domain containing protein, putative, expressed
TAIR PP10 AT2G01600.1 -2 3e-33 125 74/105 (70%) ENTH/ANTH/VHS superfamily protein | chr2:268975-272356 FORWARD LENGTH=571