MLOC_50050 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.243875.553616.709235.34441
LEAShoots from the seedlings (10 cm shoot stage)8.8930810.403914.847.32248
INF1Young developing inflorescences (5mm)5.505714.869726.492083.39328
INF2Developing inflorescences (1-1.5 cm)4.32424.367494.08383.4449
ROORoots from the seedlings (10 cm shoot stage)8.446877.6479711.30227.23601
NODDeveloping tillers at six leaf stage, 3rd internode9.114567.0686613.865120.3821
CAR5Developing grain, bracts removed (5 DPA)3.372074.326982.862792.38007
CAR15Developing grain, bracts removed (15 DPA)1.442531.57820.6957422.22837



CDS Structure of MLOC_50050






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_50050.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_50050.1CUST_12643_PI427708083AvailableAvailablecontig_353420 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g56480.3 +1 2e-26 107 52/60 (87%) 13104.m05883 protein pelota, putative, expressed
TAIR PP10 AT4G27650.1 +1 1e-22 96 46/60 (77%) | Symbols: PEL1 | Eukaryotic release factor 1 (eRF1) family protein | chr4:13803459-13807556 REVERSE LENGTH=378