MLOC_50010 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains38.627952.017957.722543.4529
LEAShoots from the seedlings (10 cm shoot stage)88.9052162.347115.89291.8252
INF1Young developing inflorescences (5mm)18.051224.361833.305516.9016
INF2Developing inflorescences (1-1.5 cm)14.37515.305124.436417.0992
ROORoots from the seedlings (10 cm shoot stage)50.323650.143850.649755.0184
NODDeveloping tillers at six leaf stage, 3rd internode58.044749.906639.7475141.991
CAR5Developing grain, bracts removed (5 DPA)7.423766.743457.199076.32001
CAR15Developing grain, bracts removed (15 DPA)1.853041.317683.199674.06457



CDS Structure of MLOC_50010






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_50010.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_50010.2CUST_12639_PI427708083AvailableAvailablecontig_352528 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g67054.3 -2 1e-51 173 81/87 (93%) 13101.m14970 protein calreticulin precursor protein, putative, expressed
TAIR PP10 AT1G08450.3 -2 7e-48 163 75/87 (86%) | Symbols: CRT3 | calreticulin 3 | chr1:2668008-2671800 REVERSE LENGTH=399