MLOC_50008 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5574211.626051.117580.807079
LEAShoots from the seedlings (10 cm shoot stage)0.5819570.9661771.79590.64304
INF1Young developing inflorescences (5mm)0.4445950.3189240.6561730.276566
INF2Developing inflorescences (1-1.5 cm)0.5990090.4719460.6933770.437934
ROORoots from the seedlings (10 cm shoot stage)0.1795080.2196230.7426150.22849
NODDeveloping tillers at six leaf stage, 3rd internode0.1931770.7777491.203192.02916
CAR5Developing grain, bracts removed (5 DPA)1.304641.056880.8559920.720611
CAR15Developing grain, bracts removed (15 DPA)0.8494540.7300530.7108761.25926



CDS Structure of MLOC_50008






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_50008.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_50008.2CUST_7095_PI427708083AvailableAvailablecontig_352501 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g25130.1 +2 1e-25 102 48/58 (83%) 13110.m02113 protein aminotransferase, classes I and II, domain containing protein, expressed
TAIR PP10 AT1G17290.1 +2 6e-19 87 41/58 (71%) | Symbols: AlaAT1 | alanine aminotransferas | chr1:5922771-5926093 FORWARD LENGTH=543