MLOC_50007 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.402522.968927.092116.4519
LEAShoots from the seedlings (10 cm shoot stage)13.73755.552873.539635.89369
INF1Young developing inflorescences (5mm)4.99283.924045.042463.05824
INF2Developing inflorescences (1-1.5 cm)2.354982.079142.940192.03008
ROORoots from the seedlings (10 cm shoot stage)14.466420.581416.770317.7747
NODDeveloping tillers at six leaf stage, 3rd internode14.82048.364263.8720221.845
CAR5Developing grain, bracts removed (5 DPA)10.951814.892619.427410.6607
CAR15Developing grain, bracts removed (15 DPA)5.217824.785465.228838.94013



CDS Structure of MLOC_50007






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_50007.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251008.1NoneNoneNoneNone
MLOC_50007.1CUST_13501_PI427708083AvailableAvailablecontig_352491 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g73580.1 -3 0.0 627 292/358 (82%) 13101.m08029 protein glycosyl hydrolases, putative, expressed
TAIR PP10 AT1G55120.1 -3 1e-142 342 171/361 (47%) | Symbols: ATFRUCT5, AtcwINV3, FRUCT5 | beta-fructofuranosidase 5 | chr1:20566617-20569165 FORWARD LENGTH=594