MLOC_50000 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains001.080230.571792
LEAShoots from the seedlings (10 cm shoot stage)0.8602040.4274160.7002960.475564
INF1Young developing inflorescences (5mm)0.8862140.6816150.5870360.485342
INF2Developing inflorescences (1-1.5 cm)1.775670.7396781.466221.21293
ROORoots from the seedlings (10 cm shoot stage)00.43790801.01501
NODDeveloping tillers at six leaf stage, 3rd internode0.4217770.3321690.8618281.08267
CAR5Developing grain, bracts removed (5 DPA)0.5693040.3421080.2180920.323397
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_50000






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_50000.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_50000.1CUST_7094_PI427708083AvailableAvailablecontig_352355 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g08170.1 -2 3e-17 79 37/40 (93%) 13107.m00806 protein ruvB-like, putative, expressed
TAIR PP10 AT5G22330.1 -2 8e-16 74 36/39 (92%) | Symbols: ATTIP49A, RIN1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:7391026-7394071 REVERSE LENGTH=458