MLOC_500 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 6.61707 | 8.42167 | 8.5174 | 7.32565 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 8.17552 | 6.25614 | 4.63295 | 5.16646 |
| INF1 | Young developing inflorescences (5mm) | 18.596 | 18.1789 | 20.2453 | 14.358 |
| INF2 | Developing inflorescences (1-1.5 cm) | 18.9776 | 24.3243 | 19.2811 | 21.9019 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 4.43247 | 8.39753 | 5.35449 | 8.0851 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 5.45717 | 4.81557 | 6.875 | 16.4157 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 14.8201 | 14.7375 | 16.4266 | 13.4757 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 5.63406 | 5.92997 | 4.81716 | 11.5743 |
CDS Structure of MLOC_500
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_500.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os07g09400.1 |
+1 |
3e-131 |
417 |
208/253 (82%) |
13107.m00947 protein RNA ligase isoform 1, putative, expressed |
| TAIR PP10 |
AT1G07910.2 |
+1 |
2e-95 |
318 |
154/255 (60%) |
| Symbols: ATRNL, RNL, AtRLG1 | RNAligase | chr1:2446712-2454386 FORWARD LENGTH=1104 |