MLOC_500 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.617078.421678.51747.32565
LEAShoots from the seedlings (10 cm shoot stage)8.175526.256144.632955.16646
INF1Young developing inflorescences (5mm)18.59618.178920.245314.358
INF2Developing inflorescences (1-1.5 cm)18.977624.324319.281121.9019
ROORoots from the seedlings (10 cm shoot stage)4.432478.397535.354498.0851
NODDeveloping tillers at six leaf stage, 3rd internode5.457174.815576.87516.4157
CAR5Developing grain, bracts removed (5 DPA)14.820114.737516.426613.4757
CAR15Developing grain, bracts removed (15 DPA)5.634065.929974.8171611.5743



CDS Structure of MLOC_500






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_500.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_500.1CUST_12638_PI427708083AvailableAvailablecontig_103507 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g09400.1 +1 3e-131 417 208/253 (82%) 13107.m00947 protein RNA ligase isoform 1, putative, expressed
TAIR PP10 AT1G07910.2 +1 2e-95 318 154/255 (60%) | Symbols: ATRNL, RNL, AtRLG1 | RNAligase | chr1:2446712-2454386 FORWARD LENGTH=1104