MLOC_49961 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains107.466139.226120.765234.504
LEAShoots from the seedlings (10 cm shoot stage)39.920717.735216.183336.6953
INF1Young developing inflorescences (5mm)33.127826.600927.816654.4034
INF2Developing inflorescences (1-1.5 cm)18.002217.61319.353345.1853
ROORoots from the seedlings (10 cm shoot stage)84.25254.179556.9152137.696
NODDeveloping tillers at six leaf stage, 3rd internode72.953831.920440.0398185.62
CAR5Developing grain, bracts removed (5 DPA)39.956745.577841.0426100.905
CAR15Developing grain, bracts removed (15 DPA)2.645683.807172.0961316.2796



CDS Structure of MLOC_49961






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_49961.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_49961.1NoneAvailableAvailablecontig_351605 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g26850.3 +1 5e-13 65 31/34 (91%) 13111.m02571 protein erythronate-4-phosphate dehydrogenase, putative, expressed
TAIR PP10 AT4G13940.1 +2 2e-25 66 32/36 (89%) | Symbols: HOG1, EMB1395, SAHH1, MEE58, ATSAHH1 | S-adenosyl-L-homocysteine hydrolase | chr4:8054931-8056676 FORWARD LENGTH=485