MLOC_49936 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.023413800.0513034
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)1.613212.498481.224442.02585
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_49936






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_49936.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_49936.1CUST_12648_PI427708080AvailableAvailablecontig_351166 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g35650.1 -3 0.0 575 325/524 (62%) 13106.m03681 protein reticuline oxidase-like protein precursor, putative, expressed
TAIR PP10 AT5G44410.1 -3 6e-122 375 233/549 (42%) FAD-binding Berberine family protein | chr5:17891246-17892853 REVERSE LENGTH=535