MLOC_49876 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0.0836505000.0818634
INF1Young developing inflorescences (5mm)0.6055650.1895660.3849790.342122
INF2Developing inflorescences (1-1.5 cm)13.542110.11713.655313.5279
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode00.02305050.06062780.141746
CAR5Developing grain, bracts removed (5 DPA)64.497780.421475.96573.7602
CAR15Developing grain, bracts removed (15 DPA)6.114957.38717.1808316.3357



CDS Structure of MLOC_49876






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_49876.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_49876.1CUST_12634_PI427708083AvailableAvailablecontig_350004 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g32948.1 +3 2e-27 110 55/58 (95%) 13109.m03304 protein OsMADS8 - MADS-box family gene with MIKCc type-box, expressed
TAIR PP10 AT1G24260.3 +3 1e-26 107 53/58 (91%) | Symbols: SEP3 | K-box region and MADS-box transcription factor family protein | chr1:8593790-8595862 REVERSE LENGTH=237