MLOC_49846 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.045712400.0784667
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)000.05275380.0335352
INF2Developing inflorescences (1-1.5 cm)00.034762900.0515247
ROORoots from the seedlings (10 cm shoot stage)0.0895498000.0500321
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)76.9656100.3146.2572171.013



CDS Structure of MLOC_49846






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_49846.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_49846.1CUST_7063_PI427708083AvailableAvailablecontig_349537 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g41438.1 +1 2e-101 207 104/163 (64%) 13103.m04460 protein serpin domain containing protein, putative, expressed
TAIR PP10 AT2G25240.1 +1 4e-61 163 86/164 (52%) Serine protease inhibitor (SERPIN) family protein | chr2:10751872-10753134 REVERSE LENGTH=385