MLOC_49808 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.7525880.63445500.819502
LEAShoots from the seedlings (10 cm shoot stage)4.806931.197140.9585072.14033
INF1Young developing inflorescences (5mm)0.6711491.2779700.800311
INF2Developing inflorescences (1-1.5 cm)1.541070.9154751.40711.24836
ROORoots from the seedlings (10 cm shoot stage)3.699221.9826903.95105
NODDeveloping tillers at six leaf stage, 3rd internode01.628761.339758.00323
CAR5Developing grain, bracts removed (5 DPA)3.486622.408452.906062.38784
CAR15Developing grain, bracts removed (15 DPA)0.6462662.006020.9753292.37006



CDS Structure of MLOC_49808






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_49808.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_49808.1CUST_7058_PI427708083AvailableAvailablecontig_348829 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g47820.2 -2 4e-19 82 48/61 (79%) 13107.m05108 protein acyl-CoA dehydrogenase family member 10, putative, expressed
TAIR PP10 AT3G06810.1 -2 6e-15 69 38/61 (62%) | Symbols: IBR3 | acyl-CoA dehydrogenase-related | chr3:2146534-2150654 FORWARD LENGTH=824