MLOC_49802 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.589211.851112.363111.75882
LEAShoots from the seedlings (10 cm shoot stage)1.343520.172860.3362510.558118
INF1Young developing inflorescences (5mm)7.993119.3010510.27396.9413
INF2Developing inflorescences (1-1.5 cm)8.9731910.06938.954729.42589
ROORoots from the seedlings (10 cm shoot stage)2.129042.395762.871752.73846
NODDeveloping tillers at six leaf stage, 3rd internode0.2576060.3416170.4700131.17885
CAR5Developing grain, bracts removed (5 DPA)1.907641.886411.839041.65196
CAR15Developing grain, bracts removed (15 DPA)1.491851.42061.282062.92095



CDS Structure of MLOC_49802






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_49802.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_49802.1CUST_12641_PI427708080AvailableAvailablecontig_348756 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g23250.1 +3 3e-78 281 257/837 (31%) 13105.m02357 protein Leucine Rich Repeat family protein, expressed
TAIR PP10 AT1G69550.1 +3 1e-47 186 181/625 (29%) disease resistance protein (TIR-NBS-LRR class) | chr1:26148836-26153374 REVERSE LENGTH=1400