MLOC_49760 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.838595.319535.707334.43224
LEAShoots from the seedlings (10 cm shoot stage)13.05548.063727.309737.45855
INF1Young developing inflorescences (5mm)8.9269912.305613.19517.86969
INF2Developing inflorescences (1-1.5 cm)7.495999.851417.469328.63249
ROORoots from the seedlings (10 cm shoot stage)7.238246.071235.78556.56857
NODDeveloping tillers at six leaf stage, 3rd internode12.67215.806916.002242.6229
CAR5Developing grain, bracts removed (5 DPA)9.1371210.1837.879097.63231
CAR15Developing grain, bracts removed (15 DPA)1.842670.7622673.860193.59323



CDS Structure of MLOC_49760






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_49760.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_49760.1CUST_7050_PI427708083AvailableAvailablecontig_347833 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g36465.1 +3 1e-21 85 40/58 (69%) 13107.m24453 protein vacuolar ATP synthase subunit H, putative, expressed
TAIR PP10 AT3G42050.1 +3 4e-15 71 34/56 (61%) vacuolar ATP synthase subunit H family protein | chr3:14228846-14232228 REVERSE LENGTH=441