MLOC_49746 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.4062160.3256250.272971
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)00.21120300.112752
INF2Developing inflorescences (1-1.5 cm)0.7458010.8218090.2078810.56239
ROORoots from the seedlings (10 cm shoot stage)1.550351.733120.7496471.43922
NODDeveloping tillers at six leaf stage, 3rd internode0.8237411.191112.226283.26792
CAR5Developing grain, bracts removed (5 DPA)1.952851.9172.705121.48812
CAR15Developing grain, bracts removed (15 DPA)6.105519.183585.5520510.4532



CDS Structure of MLOC_49746






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_49746.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_49746.1CUST_12630_PI427708083AvailableAvailablecontig_347607 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g17980.2 -3 2e-45 158 74/81 (91%) 13103.m02151 protein CAMK_KIN1/SNF1/Nim1_like_AMPKh.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
TAIR PP10 AT3G29160.3 -3 2e-42 147 68/78 (87%) | Symbols: AKIN11, KIN11 | SNF1 kinase homolog 11 | chr3:11129768-11131510 REVERSE LENGTH=359