MLOC_49701 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.9625318.510715.672114.0733
LEAShoots from the seedlings (10 cm shoot stage)14.480710.131711.80569.74064
INF1Young developing inflorescences (5mm)35.286832.601225.185325.2436
INF2Developing inflorescences (1-1.5 cm)34.045937.731231.446136.0764
ROORoots from the seedlings (10 cm shoot stage)8.682816.017111.906915.8632
NODDeveloping tillers at six leaf stage, 3rd internode2.039473.316465.3559111.0357
CAR5Developing grain, bracts removed (5 DPA)25.461523.686524.649922.243
CAR15Developing grain, bracts removed (15 DPA)5.810985.122974.6141611.6645



CDS Structure of MLOC_49701






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_49701.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_49701.1CUST_17708_PI427708080AvailableAvailablecontig_346502 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g40600.1 -3 0.0 1261 643/688 (93%) 13106.m04222 protein elongation factor, putative, expressed
TAIR PP10 AT1G06220.1 -3 0.0 1065 531/688 (77%) | Symbols: MEE5, CLO, GFA1 | Ribosomal protein S5/Elongation factor G/III/V family protein | chr1:1900524-1904583 FORWARD LENGTH=987