MLOC_49625 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.6140623.025619.800216.1613
LEAShoots from the seedlings (10 cm shoot stage)24.949515.446316.693615.376
INF1Young developing inflorescences (5mm)53.334555.23152.363239.1449
INF2Developing inflorescences (1-1.5 cm)69.29163.889559.37462.7494
ROORoots from the seedlings (10 cm shoot stage)8.8561118.88115.622517.7906
NODDeveloping tillers at six leaf stage, 3rd internode23.96526.184931.293782.263
CAR5Developing grain, bracts removed (5 DPA)27.703525.421628.186322.6317
CAR15Developing grain, bracts removed (15 DPA)7.754367.62577.6409215.1139



CDS Structure of MLOC_49625






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_49625.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_49625.2CUST_12627_PI427708080AvailableAvailablecontig_345279 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g32340.1 +1 0.0 820 416/563 (74%) 13102.m03495 protein Spc97 / Spc98 family protein, putative, expressed
TAIR PP10 AT1G80260.1 +1 6e-136 374 228/567 (40%) | Symbols: emb1427 | Spc97 / Spc98 family of spindle pole body (SBP) component | chr1:30175924-30180511 FORWARD LENGTH=995