MLOC_49603 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains22.904532.481231.336829.5531
LEAShoots from the seedlings (10 cm shoot stage)18.713416.034815.564513.5758
INF1Young developing inflorescences (5mm)37.177736.987538.990632.3328
INF2Developing inflorescences (1-1.5 cm)23.967234.338923.161330.5831
ROORoots from the seedlings (10 cm shoot stage)17.939621.26718.136722.639
NODDeveloping tillers at six leaf stage, 3rd internode3.693554.3827711.038516.6591
CAR5Developing grain, bracts removed (5 DPA)30.566230.872330.871729.5393
CAR15Developing grain, bracts removed (15 DPA)5.483365.017134.8539312.2877



CDS Structure of MLOC_49603






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_49603.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_49603.1CUST_12625_PI427708080AvailableAvailablecontig_344918 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g24354.1 -3 8e-150 444 234/277 (84%) 13102.m02639 protein pyridoxal-dependent decarboxylase protein, putative, expressed
TAIR PP10 AT3G14390.1 -3 5e-110 341 157/208 (75%) Pyridoxal-dependent decarboxylase family protein | chr3:4806771-4808954 FORWARD LENGTH=484