MLOC_49568 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.312511.124110.9300851.70843
LEAShoots from the seedlings (10 cm shoot stage)0.8586461.790288.951773.8892
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.107698000.133508
ROORoots from the seedlings (10 cm shoot stage)12.392710.712214.860217.1974
NODDeveloping tillers at six leaf stage, 3rd internode0.4554210.5578710.4363921.74504
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0.6079080.11508601.56934



CDS Structure of MLOC_49568






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_49568.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_49568.1NoneAvailableAvailablecontig_344184 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g38710.1 +1 2e-51 167 94/146 (64%) 13110.m03526 protein glutathione S-transferase, putative, expressed
TAIR PP10 AT1G10360.1 +1 4e-36 127 71/147 (48%) | Symbols: ATGSTU18, GST29, GSTU18 | glutathione S-transferase TAU 18 | chr1:3395738-3396806 REVERSE LENGTH=227