- Predicted Gene MLOC_49483
MLOC_49483 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_49483_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_49483_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 11.9426 | 20.0161 | 16.0856 | 18.3515 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 809.375 | 1559.66 | 1343.15 | 1070.61 |
INF1 | Young developing inflorescences (5mm) | 27.9422 | 25.6947 | 26.3799 | 24.9694 |
INF2 | Developing inflorescences (1-1.5 cm) | 31.0454 | 32.3714 | 41.3585 | 39.7271 |
ROO | Roots from the seedlings (10 cm shoot stage) | 2.77801 | 6.02771 | 13.5857 | 7.98682 |
NOD | Developing tillers at six leaf stage, 3rd internode | 403.732 | 439.595 | 603.996 | 1393.67 |
CAR5 | Developing grain, bracts removed (5 DPA) | 154.443 | 160.86 | 158.856 | 165.172 |
CAR15 | Developing grain, bracts removed (15 DPA) | 42.1528 | 52.8678 | 41.1556 | 117.022 |
CDS Structure of MLOC_49483
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_49483.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g10390.1 |
-3 |
1e-143 |
420 |
209/239 (87%) |
13102.m01154 protein chlorophyll A-B binding protein, putative, expressed |
TAIR PP10 |
AT1G61520.3 |
-3 |
3e-128 |
380 |
190/238 (80%) |
| Symbols: LHCA3 | photosystem I light harvesting complex gene 3 | chr1:22700152-22701149 FORWARD LENGTH=273 |