MLOC_49454 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.6801110.29537.890877.83451
LEAShoots from the seedlings (10 cm shoot stage)2.99340.3160930.2289191.1094
INF1Young developing inflorescences (5mm)29.550727.586124.974622.7141
INF2Developing inflorescences (1-1.5 cm)26.593930.405324.90629.9146
ROORoots from the seedlings (10 cm shoot stage)0.7244413.568862.8543.93335
NODDeveloping tillers at six leaf stage, 3rd internode0.548171.055311.877214.23097
CAR5Developing grain, bracts removed (5 DPA)10.86310.05519.705959.87119
CAR15Developing grain, bracts removed (15 DPA)1.423161.486051.036822.99119



CDS Structure of MLOC_49454






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_49454.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_49454.3CUST_12617_PI427708080AvailableAvailablecontig_341980 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g11980.1 -2 0.0 834 500/679 (74%) 13105.m01298 protein timeless protein, expressed
TAIR PP10 AT5G52910.1 -2 7e-129 426 302/693 (44%) | Symbols: ATIM | timeless family protein | chr5:21457774-21463159 REVERSE LENGTH=1141