- Predicted Gene MLOC_49454
MLOC_49454 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 2.68011 | 10.2953 | 7.89087 | 7.83451 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 2.9934 | 0.316093 | 0.228919 | 1.1094 |
INF1 | Young developing inflorescences (5mm) | 29.5507 | 27.5861 | 24.9746 | 22.7141 |
INF2 | Developing inflorescences (1-1.5 cm) | 26.5939 | 30.4053 | 24.906 | 29.9146 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.724441 | 3.56886 | 2.854 | 3.93335 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.54817 | 1.05531 | 1.87721 | 4.23097 |
CAR5 | Developing grain, bracts removed (5 DPA) | 10.863 | 10.0551 | 9.70595 | 9.87119 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.42316 | 1.48605 | 1.03682 | 2.99119 |
CDS Structure of MLOC_49454
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_49454.3
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os05g11980.1 |
-2 |
0.0 |
834 |
500/679 (74%) |
13105.m01298 protein timeless protein, expressed |
TAIR PP10 |
AT5G52910.1 |
-2 |
7e-129 |
426 |
302/693 (44%) |
| Symbols: ATIM | timeless family protein | chr5:21457774-21463159 REVERSE LENGTH=1141 |