MLOC_4943 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.022119.777817.69715.6194
LEAShoots from the seedlings (10 cm shoot stage)16.428611.930611.430310.8979
INF1Young developing inflorescences (5mm)21.112120.242318.616915.9291
INF2Developing inflorescences (1-1.5 cm)18.743421.811419.105221.1826
ROORoots from the seedlings (10 cm shoot stage)9.3347719.188512.902518.8091
NODDeveloping tillers at six leaf stage, 3rd internode12.801712.323710.103237.0829
CAR5Developing grain, bracts removed (5 DPA)25.179622.256923.22121.7317
CAR15Developing grain, bracts removed (15 DPA)10.786210.05610.212622.4141



CDS Structure of MLOC_4943






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_4943.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_4943.1CUST_12616_PI427708080AvailableAvailablecontig_135695 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g48380.1 -3 0.0 1830 972/1178 (83%) 13102.m05470 protein expressed protein
TAIR PP10 AT5G65950.1 -3 0.0 1128 624/1188 (53%) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1683, C-terminal (InterPro:IPR012880), Foie gras liver health family 1 (InterPro:IPR021773); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26380290-26384960 FORWARD LENGTH=1190