MLOC_4943 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 10.0221 | 19.7778 | 17.697 | 15.6194 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 16.4286 | 11.9306 | 11.4303 | 10.8979 |
INF1 | Young developing inflorescences (5mm) | 21.1121 | 20.2423 | 18.6169 | 15.9291 |
INF2 | Developing inflorescences (1-1.5 cm) | 18.7434 | 21.8114 | 19.1052 | 21.1826 |
ROO | Roots from the seedlings (10 cm shoot stage) | 9.33477 | 19.1885 | 12.9025 | 18.8091 |
NOD | Developing tillers at six leaf stage, 3rd internode | 12.8017 | 12.3237 | 10.1032 | 37.0829 |
CAR5 | Developing grain, bracts removed (5 DPA) | 25.1796 | 22.2569 | 23.221 | 21.7317 |
CAR15 | Developing grain, bracts removed (15 DPA) | 10.7862 | 10.056 | 10.2126 | 22.4141 |
CDS Structure of MLOC_4943
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_4943.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g48380.1 |
-3 |
0.0 |
1830 |
972/1178 (83%) |
13102.m05470 protein expressed protein |
TAIR PP10 |
AT5G65950.1 |
-3 |
0.0 |
1128 |
624/1188 (53%) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1683, C-terminal (InterPro:IPR012880), Foie gras liver health family 1 (InterPro:IPR021773); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26380290-26384960 FORWARD LENGTH=1190 |