MLOC_49417 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains52.799441.603834.823847.3965
LEAShoots from the seedlings (10 cm shoot stage)16.99970.2556022.217525.60227
INF1Young developing inflorescences (5mm)105.39699.9172107.486103.319
INF2Developing inflorescences (1-1.5 cm)67.567104.87295.2694119.945
ROORoots from the seedlings (10 cm shoot stage)20.658721.661736.561631.442
NODDeveloping tillers at six leaf stage, 3rd internode0.370350.3088490.5549281.19366
CAR5Developing grain, bracts removed (5 DPA)45.519249.698133.036150.122
CAR15Developing grain, bracts removed (15 DPA)1.859151.399633.323625.627



CDS Structure of MLOC_49417






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_49417.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_49417.1NoneAvailableAvailablecontig_341258 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g05730.1 +2 2e-73 219 113/124 (91%) 13111.m00557 protein histone H3, putative, expressed
TAIR PP10 AT5G65360.1 +2 8e-74 219 113/124 (91%) Histone superfamily protein | chr5:26120099-26120509 REVERSE LENGTH=136