MLOC_49355 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.46578.5022310.523611.0852
LEAShoots from the seedlings (10 cm shoot stage)7.301584.0649710.43215.9432
INF1Young developing inflorescences (5mm)5.593177.5569113.98216.41063
INF2Developing inflorescences (1-1.5 cm)3.155934.146325.066973.84953
ROORoots from the seedlings (10 cm shoot stage)30.21469.217148.9758113.701
NODDeveloping tillers at six leaf stage, 3rd internode5.2814714.642511.865137.2236
CAR5Developing grain, bracts removed (5 DPA)15.450616.396415.434213.9998
CAR15Developing grain, bracts removed (15 DPA)1.873442.230211.445834.04831



CDS Structure of MLOC_49355






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_49355.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_49355.1CUST_12610_PI427708080AvailableAvailablecontig_340246 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g03750.1 +1 2e-55 179 102/110 (93%) 13101.m00326 protein expressed protein
TAIR PP10 AT1G67080.1 +1 2e-43 147 77/110 (70%) | Symbols: ABA4 | abscisic acid (aba)-deficient 4 | chr1:25045405-25046681 REVERSE LENGTH=220