MLOC_49275 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.526410.4425164.058472.25224
LEAShoots from the seedlings (10 cm shoot stage)4.573191.583.588023.40162
INF1Young developing inflorescences (5mm)1.267141.25452.03121.48535
INF2Developing inflorescences (1-1.5 cm)1.531031.010051.018331.57309
ROORoots from the seedlings (10 cm shoot stage)2.685831.940934.498113.67529
NODDeveloping tillers at six leaf stage, 3rd internode8.671567.166871.7282426.3397
CAR5Developing grain, bracts removed (5 DPA)1.461322.616682.515992.35026
CAR15Developing grain, bracts removed (15 DPA)00.44764902.26699



CDS Structure of MLOC_49275






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_49275.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_49275.1CUST_6968_PI427708083AvailableAvailablecontig_338904 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g65720.1 -1 4e-30 112 49/63 (78%) 13101.m07105 protein expressed protein
TAIR PP10 AT5G67540.1 -1 3e-22 89 39/64 (61%) Arabinanase/levansucrase/invertase | chr5:26944253-26946058 REVERSE LENGTH=466