MLOC_49246 FPKM values

FPKM by Treatment	FPKM by Replicate

Treatment ID	Treatment Description	Rep 1 FPKM	Rep 2 FPKM	Rep 3 FPKM	Treatment FPKM
EMB	4-day embryos dissected from germinating grains	8.09141	12.5058	11.6254	8.17996
LEA	Shoots from the seedlings (10 cm shoot stage)	5.27437	4.53543	7.05548	3.79655
INF1	Young developing inflorescences (5mm)	9.26135	8.60205	11.4424	6.02397
INF2	Developing inflorescences (1-1.5 cm)	10.9065	10.4863	7.91243	8.96847
ROO	Roots from the seedlings (10 cm shoot stage)	5.36541	5.1894	5.44558	4.74419
NOD	Developing tillers at six leaf stage, 3rd internode	4.20065	6.86192	8.76313	18.0269
CAR5	Developing grain, bracts removed (5 DPA)	6.43137	6.26383	8.00624	4.97283
CAR15	Developing grain, bracts removed (15 DPA)	1.72491	3.03493	2.5432	3.8071

CDS Structure of MLOC_49246

Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_49246.1

Cluster member	Probe ID	FPKM by replicate	FPKM by treatment	Source Contig
MLOC_49246.1	CUST_12615_PI427708083	Available	Available	contig_338369 (Mapped)

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP6	LOC_Os03g51030.3	-3	4e-45	165	78/87 (90%)	13103.m05550 protein phytochrome A, putative, expressed
TAIR PP10	AT1G09570.2	-3	2e-37	141	64/87 (74%)	| Symbols: PHYA, FHY2, FRE1, HY8 | phytochrome A | chr1:3095498-3098892 REVERSE LENGTH=1014