MLOC_49158 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains112.69562.155161.802981.3002
LEAShoots from the seedlings (10 cm shoot stage)37.922221.56635.474728.8473
INF1Young developing inflorescences (5mm)124.863131.144139.107123.111
INF2Developing inflorescences (1-1.5 cm)106.124112.10598.7738131.689
ROORoots from the seedlings (10 cm shoot stage)106.23776.118263.5787107.262
NODDeveloping tillers at six leaf stage, 3rd internode6.300299.1369915.186234.8045
CAR5Developing grain, bracts removed (5 DPA)99.1986101.77299.3435112.872
CAR15Developing grain, bracts removed (15 DPA)40.066936.798833.987995.2959



CDS Structure of MLOC_49158






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_49158.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355349NoneNoneNoneNone
MLOC_49158.1CUST_245_PI427708083AvailableAvailablecontig_336657 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g08330.1 -1 2e-110 328 161/184 (88%) 13107.m00823 protein ribosomal protein L4, putative, expressed
TAIR PP10 AT3G09630.1 -1 6e-87 267 130/184 (71%) Ribosomal protein L4/L1 family | chr3:2953813-2955444 FORWARD LENGTH=406