MLOC_4904 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3713750.3016410.4244570.377874
LEAShoots from the seedlings (10 cm shoot stage)0.3919590.0396910.1764610.179162
INF1Young developing inflorescences (5mm)1.17591.18850.9299011.00746
INF2Developing inflorescences (1-1.5 cm)0.9957631.129490.6899161.16392
ROORoots from the seedlings (10 cm shoot stage)0.7880350.6053390.6938320.820327
NODDeveloping tillers at six leaf stage, 3rd internode0.03360190.06862450.153450.294324
CAR5Developing grain, bracts removed (5 DPA)1.051671.031481.151271.14937
CAR15Developing grain, bracts removed (15 DPA)0.1935840.1971230.1022770.445542



CDS Structure of MLOC_4904






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_4904.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_4904.1CUST_12589_PI427708080AvailableAvailablecontig_135646 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g13230.1 -3 0.0 914 474/553 (86%) 13103.m01533 protein pentatricopeptide, putative, expressed
TAIR PP10 AT4G37170.1 -3 0.0 580 297/551 (54%) Pentatricopeptide repeat (PPR) superfamily protein | chr4:17498580-17500655 REVERSE LENGTH=691