MLOC_49033 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains51.512768.95167.784557.823
LEAShoots from the seedlings (10 cm shoot stage)48.712816.031613.11119.7023
INF1Young developing inflorescences (5mm)67.189162.775357.612452.2015
INF2Developing inflorescences (1-1.5 cm)49.949457.033862.903559.8144
ROORoots from the seedlings (10 cm shoot stage)19.659639.183935.125835.6967
NODDeveloping tillers at six leaf stage, 3rd internode37.559813.464811.819826.2204
CAR5Developing grain, bracts removed (5 DPA)108.023103.027108.813102.693
CAR15Developing grain, bracts removed (15 DPA)21.105616.446822.339245.3886



CDS Structure of MLOC_49033






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_49033.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_49033.1CUST_12609_PI427708083AvailableAvailablecontig_334179 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g73790.1 -1 8e-38 136 65/76 (86%) 13101.m08055 protein NAD dependent epimerase/dehydratase family protein, putative, expressed
TAIR PP10 AT1G08200.1 -1 1e-31 118 54/75 (72%) | Symbols: AXS2 | UDP-D-apiose/UDP-D-xylose synthase 2 | chr1:2574259-2576609 REVERSE LENGTH=389