MLOC_48989 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.459112.933414.743312.049
LEAShoots from the seedlings (10 cm shoot stage)17.49220.063115.333313.3861
INF1Young developing inflorescences (5mm)6.077597.728386.319965.68351
INF2Developing inflorescences (1-1.5 cm)9.9813810.834914.023512.0809
ROORoots from the seedlings (10 cm shoot stage)39.5524.139339.271628.8243
NODDeveloping tillers at six leaf stage, 3rd internode18.555720.299926.863952.7765
CAR5Developing grain, bracts removed (5 DPA)20.066115.909318.23716.7734
CAR15Developing grain, bracts removed (15 DPA)5.786125.840814.6351412.8652



CDS Structure of MLOC_48989






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_48989.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_48989.1CUST_6923_PI427708083AvailableAvailablecontig_333410 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g03140.1 -2 4e-41 140 91/104 (88%) 13105.m00297 protein tetraspanin family protein, putative, expressed
TAIR PP10 AT3G45600.1 -2 4e-18 78 48/91 (53%) | Symbols: TET3 | tetraspanin3 | chr3:16733973-16735854 REVERSE LENGTH=285