MLOC_48986 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.056921.84871.619691.87094
LEAShoots from the seedlings (10 cm shoot stage)2.619961.258284.343332.53085
INF1Young developing inflorescences (5mm)2.491962.084384.564612.90452
INF2Developing inflorescences (1-1.5 cm)5.546713.668314.83295.77677
ROORoots from the seedlings (10 cm shoot stage)1.432180.2588961.980560.789691
NODDeveloping tillers at six leaf stage, 3rd internode0.6659992.184785.420579.18155
CAR5Developing grain, bracts removed (5 DPA)4.569322.617512.434583.50417
CAR15Developing grain, bracts removed (15 DPA)2.525451.202732.131965.42691



CDS Structure of MLOC_48986






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_48986.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_48986.2CUST_6922_PI427708083AvailableAvailablecontig_333357 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g34170.3 -3 3e-28 107 54/64 (84%) 13105.m03548 protein tubulin/FtsZ domain containing protein, putative, expressed
TAIR PP10 AT5G44340.1 -3 2e-28 107 53/64 (83%) | Symbols: TUB4 | tubulin beta chain 4 | chr5:17859442-17860994 REVERSE LENGTH=444