MLOC_4896 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6912182.235191.452411.70885
LEAShoots from the seedlings (10 cm shoot stage)1.271610.1071990.1322840.47289
INF1Young developing inflorescences (5mm)11.395711.919711.12229.78375
INF2Developing inflorescences (1-1.5 cm)11.706416.695912.028815.4883
ROORoots from the seedlings (10 cm shoot stage)0.182350.9819630.581681.07849
NODDeveloping tillers at six leaf stage, 3rd internode0.0248390.01608450.005323650.0525429
CAR5Developing grain, bracts removed (5 DPA)3.379283.042382.685482.99693
CAR15Developing grain, bracts removed (15 DPA)0.319710.2490220.5705280.793629



CDS Structure of MLOC_4896






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_4896.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_4896.1CUST_12583_PI427708080AvailableAvailablecontig_135631 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g49010.1 -3 0.0 1051 665/1432 (46%) 13107.m05263 protein TOPBP1B - Similar to DNA replication protein TOPBP1 from, expressed
TAIR PP10 AT4G02110.1 -3 6e-155 511 430/1446 (30%) transcription coactivators | chr4:935191-940191 FORWARD LENGTH=1329