MLOC_48910 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.699471.954411.635221.78763
LEAShoots from the seedlings (10 cm shoot stage)1.567060.9316360.583320.811166
INF1Young developing inflorescences (5mm)4.938426.435854.804314.70425
INF2Developing inflorescences (1-1.5 cm)5.831466.662834.885746.74905
ROORoots from the seedlings (10 cm shoot stage)1.28391.670781.53571.79577
NODDeveloping tillers at six leaf stage, 3rd internode0.4777620.6790851.430652.16737
CAR5Developing grain, bracts removed (5 DPA)2.234342.009012.172152.13862
CAR15Developing grain, bracts removed (15 DPA)0.3390180.3036720.3067490.728315



CDS Structure of MLOC_48910






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_48910.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355072NoneNoneNoneNone
MLOC_48910.4CUST_2750_PI427708080AvailableAvailablecontig_331880 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g66690.1 +2 0.0 1142 678/967 (70%) 13101.m07218 protein ZIP4/SPO22, putative, expressed
TAIR PP10 AT5G48390.1 +2 2e-179 553 364/940 (39%) | Symbols: ATZIP4 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:19612078-19615363 FORWARD LENGTH=936