MLOC_48871 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.75629002.8834
LEAShoots from the seedlings (10 cm shoot stage)01.4361300.787662
INF1Young developing inflorescences (5mm)01.4976201.03313
INF2Developing inflorescences (1-1.5 cm)01.599460.7527891.19579
ROORoots from the seedlings (10 cm shoot stage)002.556050.615295
NODDeveloping tillers at six leaf stage, 3rd internode0.6396391.49291.385784.14146
CAR5Developing grain, bracts removed (5 DPA)2.305612.029520.8065671.46472
CAR15Developing grain, bracts removed (15 DPA)0.716254002.59042



CDS Structure of MLOC_48871






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_48871.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_48871.1CUST_6899_PI427708083AvailableAvailablecontig_331141 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g33510.2 +3 1e-29 111 53/59 (90%) 13109.m07549 protein hydroxyproline-rich glycoprotein family protein, putative, expressed
TAIR PP10 AT2G33490.1 +3 3e-22 90 43/58 (74%) hydroxyproline-rich glycoprotein family protein | chr2:14183552-14187666 FORWARD LENGTH=623