- Predicted Gene MLOC_48871
MLOC_48871 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 1.75629 | 0 | 0 | 2.8834 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0 | 1.43613 | 0 | 0.787662 |
INF1 | Young developing inflorescences (5mm) | 0 | 1.49762 | 0 | 1.03313 |
INF2 | Developing inflorescences (1-1.5 cm) | 0 | 1.59946 | 0.752789 | 1.19579 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0 | 0 | 2.55605 | 0.615295 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.639639 | 1.4929 | 1.38578 | 4.14146 |
CAR5 | Developing grain, bracts removed (5 DPA) | 2.30561 | 2.02952 | 0.806567 | 1.46472 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.716254 | 0 | 0 | 2.59042 |
CDS Structure of MLOC_48871
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_48871.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os09g33510.2 |
+3 |
1e-29 |
111 |
53/59 (90%) |
13109.m07549 protein hydroxyproline-rich glycoprotein family protein, putative, expressed |
TAIR PP10 |
AT2G33490.1 |
+3 |
3e-22 |
90 |
43/58 (74%) |
hydroxyproline-rich glycoprotein family protein | chr2:14183552-14187666 FORWARD LENGTH=623 |