MLOC_48870 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains202.004104.826115.85198.3727
LEAShoots from the seedlings (10 cm shoot stage)73.137840.770360.713436.7607
INF1Young developing inflorescences (5mm)194.046217.338245.309117.185
INF2Developing inflorescences (1-1.5 cm)120.393117.117127.78894.4702
ROORoots from the seedlings (10 cm shoot stage)139.023103.292131.87189.3862
NODDeveloping tillers at six leaf stage, 3rd internode18.413719.48859.035363.0846
CAR5Developing grain, bracts removed (5 DPA)81.130485.489690.927956.5208
CAR15Developing grain, bracts removed (15 DPA)25.813622.382720.469936.4934



CDS Structure of MLOC_48870






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_48870.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_48870.1CUST_12606_PI427708083AvailableAvailablecontig_331133 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g06310.1 -2 3e-27 110 51/52 (98%) 13105.m00673 protein 60S ribosomal protein L18-3, putative, expressed
TAIR PP10 AT3G05590.1 -2 1e-23 100 44/52 (85%) | Symbols: RPL18 | ribosomal protein L18 | chr3:1621511-1622775 FORWARD LENGTH=187