MLOC_48777 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains26.985824.593620.289528.4279
LEAShoots from the seedlings (10 cm shoot stage)11.673402.071966.35789
INF1Young developing inflorescences (5mm)52.044558.613757.125959.4829
INF2Developing inflorescences (1-1.5 cm)33.603241.224139.664752.2547
ROORoots from the seedlings (10 cm shoot stage)22.419915.306921.681724.0367
NODDeveloping tillers at six leaf stage, 3rd internode0.2049690.1591960.1759410.558326
CAR5Developing grain, bracts removed (5 DPA)7.9843210.03267.4927910.8893
CAR15Developing grain, bracts removed (15 DPA)1.556390.25137202.93986



CDS Structure of MLOC_48777






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_48777.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_48777.1CUST_6885_PI427708083AvailableAvailablecontig_329431 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g39410.1 -1 1e-41 135 67/73 (92%) 13110.m03607 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT5G59970.1 -1 5e-42 135 67/73 (92%) Histone superfamily protein | chr5:24146352-24146663 REVERSE LENGTH=103