MLOC_4875 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.750111.380610.150112.9559
LEAShoots from the seedlings (10 cm shoot stage)4.915650.5517251.405061.90212
INF1Young developing inflorescences (5mm)22.714827.026722.280224.9219
INF2Developing inflorescences (1-1.5 cm)16.880826.063719.982130.5669
ROORoots from the seedlings (10 cm shoot stage)5.346096.364858.630229.53606
NODDeveloping tillers at six leaf stage, 3rd internode0.181260.08225380.1177310.269746
CAR5Developing grain, bracts removed (5 DPA)8.68359.424929.0420611.8287
CAR15Developing grain, bracts removed (15 DPA)0.5656110.4027290.7382481.57183



CDS Structure of MLOC_4875






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_4875.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_4875.1CUST_12567_PI427708080AvailableAvailablecontig_135605 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g04550.1 +2 2e-83 270 245/415 (59%) 13103.m00469 protein expressed protein
TAIR PP10 AT1G04030.1 +2 8e-15 77 62/166 (37%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44040.1); Has 1835 Blast hits to 1511 proteins in 238 species: Archae - 7; Bacteria - 164; Metazoa - 377; Fungi - 135; Plants - 187; Viruses - 22; Other Eukaryotes - 943 (source: NCBI BLink). | chr1:1040597-1042313 FORWARD LENGTH=434