morexGenes - Barley RNA-seq Database

Predicted Gene MLOC_48717

Gene IDMLOC_48717
Source Contig contig_328372

Gene Data

|FPKM Values|
|CDS Structures|
|Gene Cluster Members|
|Homology to Models|

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MLOC_48717 FPKM values

FPKM by Treatment	FPKM by Replicate

Treatment ID	Treatment Description	Rep 1 FPKM	Rep 2 FPKM	Rep 3 FPKM	Treatment FPKM
EMB	4-day embryos dissected from germinating grains	1.59659	3.29719	1.22438	1.44677
LEA	Shoots from the seedlings (10 cm shoot stage)	2.66815	0.598098	1.42638	1.06365
INF1	Young developing inflorescences (5mm)	3.5226	3.85204	5.31809	2.04294
INF2	Developing inflorescences (1-1.5 cm)	4.65984	3.23834	3.28752	2.94476
ROO	Roots from the seedlings (10 cm shoot stage)	1.14869	0.692479	1.71178	0.676572
NOD	Developing tillers at six leaf stage, 3rd internode	0.605912	1.56985	0.969104	3.10129
CAR5	Developing grain, bracts removed (5 DPA)	2.86266	3.11617	1.37719	1.70188
CAR15	Developing grain, bracts removed (15 DPA)	1.22574	0.712292	0.774464	1.45729

CDS Structure of MLOC_48717

Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by AK363837

Cluster member	Probe ID	FPKM by replicate	FPKM by treatment	Source Contig
AK363837	None	None	None	None
MLOC_25629.1	None	Available	None	contig_170373 (Mapped)
MLOC_25915.1	None	Available	None	contig_172141 (Mapped)
MLOC_26342.1	None	Available	None	contig_1750031 (Not mapped)
MLOC_29724.1	None	Available	None	contig_2031206 (Not mapped)
MLOC_31920.1	None	Available	None	contig_2235192 (Not mapped)
MLOC_33153.1	None	Available	None	contig_2348720 (Mapped)
MLOC_47521.1	None	Available	None	contig_307394 (Not mapped)
MLOC_48332.1	None	Available	None	contig_321541 (Not mapped)
MLOC_48596.1	None	Available	None	contig_326472 (Mapped)
MLOC_48717.1	None	Available	Available	contig_328372 (Not mapped)
MLOC_53019.1	None	Available	None	contig_379933 (Mapped)
MLOC_6984.1	None	Available	None	contig_1384356 (Not mapped)
MLOC_77072.1	None	Available	None	contig_741794 (Not mapped)
MLOC_783.1	None	Available	None	contig_1060363 (Not mapped)

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP6	None	-	-	-	-	-
TAIR PP10	None	-	-	-	-	-