MLOC_48709 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.6013511.742312.055511.1316
LEAShoots from the seedlings (10 cm shoot stage)9.460125.844127.477356.47626
INF1Young developing inflorescences (5mm)27.211226.595324.784821.6642
INF2Developing inflorescences (1-1.5 cm)22.913723.2522.646724.5886
ROORoots from the seedlings (10 cm shoot stage)7.6922912.36339.5879113.4317
NODDeveloping tillers at six leaf stage, 3rd internode0.3071330.731981.118652.60521
CAR5Developing grain, bracts removed (5 DPA)14.499213.302413.62212.9955
CAR15Developing grain, bracts removed (15 DPA)3.775623.719363.398238.12734



CDS Structure of MLOC_48709






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_48709.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376743NoneNoneNoneNone
MLOC_48709.1CUST_2746_PI427708080AvailableAvailablecontig_328333 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g44320.1 -1 0.0 1508 790/889 (89%) 13105.m04682 protein WD domain, G-beta repeat domain containing protein, expressed
TAIR PP10 AT1G15440.1 -1 0.0 1131 587/896 (66%) | Symbols: PWP2, ATPWP2 | periodic tryptophan protein 2 | chr1:5306159-5309460 REVERSE LENGTH=900