MLOC_48625 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains48.766240.26947.163246.9189
LEAShoots from the seedlings (10 cm shoot stage)43.786339.119932.207734.1858
INF1Young developing inflorescences (5mm)25.480931.937830.71226.1492
INF2Developing inflorescences (1-1.5 cm)21.92619.90314.050622.2555
ROORoots from the seedlings (10 cm shoot stage)49.948234.180923.792545.2013
NODDeveloping tillers at six leaf stage, 3rd internode21.748929.69216.495687.8605
CAR5Developing grain, bracts removed (5 DPA)21.820823.039125.717824.2928
CAR15Developing grain, bracts removed (15 DPA)5.11433.239783.5342510.0623



CDS Structure of MLOC_48625






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_48625.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_48625.2CUST_6858_PI427708083AvailableAvailablecontig_326884 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g29620.1 -1 2e-66 213 97/118 (82%) 13107.m02977 protein OsSCP39 - Putative Serine Carboxypeptidase homologue, expressed
TAIR PP10 AT3G10410.1 -1 2e-60 196 88/118 (75%) | Symbols: SCPL49, CPY | SERINE CARBOXYPEPTIDASE-LIKE 49 | chr3:3235518-3238063 REVERSE LENGTH=516