- Predicted Gene MLOC_48547
- Gene IDMLOC_48547
- Source Contig contig_325745
MLOC_48547 FPKM values
FPKM by Treatment | FPKM by Replicate |
---|---|
![]() | ![]() |
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|---|---|---|---|---|
EMB | 4-day embryos dissected from germinating grains | 1.92279 | 4.06267 | 2.69173 | 2.10548 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 2.58782 | 4.18677 | 3.74675 | 2.00817 |
INF1 | Young developing inflorescences (5mm) | 6.09406 | 8.16377 | 7.24909 | 3.9087 |
INF2 | Developing inflorescences (1-1.5 cm) | 8.17762 | 10.2172 | 7.81423 | 7.06677 |
ROO | Roots from the seedlings (10 cm shoot stage) | 1.2734 | 2.31489 | 6.17523 | 1.87172 |
NOD | Developing tillers at six leaf stage, 3rd internode | 4.28052 | 4.41192 | 3.34728 | 9.73499 |
CAR5 | Developing grain, bracts removed (5 DPA) | 6.31833 | 5.76429 | 6.997 | 4.21992 |
CAR15 | Developing grain, bracts removed (15 DPA) | 3.11743 | 3.15827 | 3.45602 | 5.04633 |
CDS Structure of MLOC_48547
![](/morexGenes/blast_net_images/MLOC_48547_assembly3_WGSMorex_rbca.fasta_genes.png)
Members of Gene Cluster
This cluster has a confidence assignment of High Confidence.The gene has a transcript that is part of a cluster represented by AK249301.1
Cluster member | Probe ID | FPKM by replicate | FPKM by treatment | Source Contig |
---|---|---|---|---|
AK249301.1 | CUST_23254_PI427708080 | None | None | None |
MLOC_13145.1 | None | Available | None | contig_156493 (Mapped) |
MLOC_1912.1 | None | Available | None | contig_1170319 (Not mapped) |
MLOC_2544.1 | None | Available | None | contig_1226734 (Not mapped) |
MLOC_2887.1 | None | Available | None | contig_1257715 (Not mapped) |
MLOC_29047.1 | None | Available | None | contig_1969596 (Not mapped) |
MLOC_30776.1 | None | Available | None | contig_21252 (Not mapped) |
MLOC_33489.1 | None | Available | None | contig_237800 (Not mapped) |
MLOC_35846.1 | None | Available | None | contig_252373 (Mapped) |
MLOC_41311.1 | None | Available | None | contig_2582226 (Not mapped) |
MLOC_42452.1 | None | Available | None | contig_2645397 (Not mapped) |
MLOC_46466.1 | None | Available | None | contig_290832 (Mapped) |
MLOC_47434.1 | None | Available | None | contig_306050 (Mapped) |
MLOC_48547.1 | None | Available | Available | contig_325745 (Not mapped) |
MLOC_59622.1 | None | Available | None | contig_437690 (Mapped) |
MLOC_80103.1 | None | Available | None | contig_886570 (Not mapped) |
MLOC_955.1 | None | Available | None | contig_1079535 (Mapped) |
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP6 | None | - | - | - | - | - |
TAIR PP10 | None | - | - | - | - | - |