MLOC_48452 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.118227.826226.314145.27612
LEAShoots from the seedlings (10 cm shoot stage)6.37165.655716.640814.43269
INF1Young developing inflorescences (5mm)30.287529.489734.159120.1644
INF2Developing inflorescences (1-1.5 cm)39.828433.063535.287332.4829
ROORoots from the seedlings (10 cm shoot stage)2.833145.997695.800535.12207
NODDeveloping tillers at six leaf stage, 3rd internode1.136972.808579.3992510.4835
CAR5Developing grain, bracts removed (5 DPA)9.232438.718098.70556.82412
CAR15Developing grain, bracts removed (15 DPA)4.126415.001365.445178.14167



CDS Structure of MLOC_48452






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_48452.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_48452.1CUST_6826_PI427708083AvailableAvailablecontig_324050 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g51790.2 -2 7e-39 147 76/146 (52%) 13105.m05601 protein RecF/RecN/SMC N terminal domain containing protein, expressed
TAIR PP10 AT5G15920.1 -2 2e-28 115 54/102 (53%) | Symbols: SMC5 | structural maintenance of chromosomes 5 | chr5:5196210-5199559 FORWARD LENGTH=1053