MLOC_48422 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.375587.74428.174916.52916
LEAShoots from the seedlings (10 cm shoot stage)8.619648.557448.338017.21125
INF1Young developing inflorescences (5mm)4.384774.223583.526023.32103
INF2Developing inflorescences (1-1.5 cm)3.76474.333463.877244.35185
ROORoots from the seedlings (10 cm shoot stage)5.834978.15357.030439.25359
NODDeveloping tillers at six leaf stage, 3rd internode3.785084.343063.8905614.3299
CAR5Developing grain, bracts removed (5 DPA)2.917632.920952.831422.79038
CAR15Developing grain, bracts removed (15 DPA)0.5941770.7044691.051631.5894



CDS Structure of MLOC_48422






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_48422.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249850.1NoneNoneNoneNone
MLOC_48422.3CUST_2744_PI427708080AvailableAvailablecontig_323318 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g19400.1 -2 0.0 1583 830/1036 (80%) 13106.m02067 protein GRAM and C2 domains containing protein, putative, expressed
TAIR PP10 AT1G03370.1 -2 0.0 1147 604/1040 (58%) C2 calcium/lipid-binding and GRAM domain containing protein | chr1:830968-834996 FORWARD LENGTH=1020