MLOC_48388 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.815757.530886.954365.60858
LEAShoots from the seedlings (10 cm shoot stage)5.777233.776523.073583.37512
INF1Young developing inflorescences (5mm)9.570839.6066210.46046.76515
INF2Developing inflorescences (1-1.5 cm)10.759411.60810.520110.2083
ROORoots from the seedlings (10 cm shoot stage)0.8299054.51216.905564.22423
NODDeveloping tillers at six leaf stage, 3rd internode2.432542.836052.205028.53367
CAR5Developing grain, bracts removed (5 DPA)8.242958.094017.636426.51427
CAR15Developing grain, bracts removed (15 DPA)3.926273.403213.452276.70371



CDS Structure of MLOC_48388






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_48388.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_48388.2CUST_12541_PI427708080AvailableAvailablecontig_322624 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g40540.1 -2 7e-62 168 107/227 (47%) 13103.m04384 protein cytochrome P450, putative, expressed
TAIR PP10 AT3G30180.1 -2 1e-41 112 75/224 (33%) | Symbols: CYP85A2, BR6OX2 | brassinosteroid-6-oxidase 2 | chr3:11810867-11813509 FORWARD LENGTH=465