MLOC_48344 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.46635.573073.630524.81099
LEAShoots from the seedlings (10 cm shoot stage)16.441413.730921.227914.8627
INF1Young developing inflorescences (5mm)1.841681.984972.19811.75517
INF2Developing inflorescences (1-1.5 cm)0.6377570.7738210.9629130.913771
ROORoots from the seedlings (10 cm shoot stage)0.879880.7914870.8284840.988634
NODDeveloping tillers at six leaf stage, 3rd internode15.288322.277730.054380.6634
CAR5Developing grain, bracts removed (5 DPA)2.310461.983592.279262.28422
CAR15Developing grain, bracts removed (15 DPA)0.03194930.2155330.04631170.276509



CDS Structure of MLOC_48344






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_48344.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365902NoneNoneNoneNone
MLOC_48344.2CUST_2742_PI427708080AvailableAvailablecontig_321762 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g05080.1 +3 1e-91 280 161/171 (94%) 13101.m00481 protein thylakoid lumenal protein, putative, expressed
TAIR PP10 AT2G44920.2 +3 6e-83 257 126/142 (89%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:18524419-18526502 FORWARD LENGTH=224