morexGenes - Barley RNA-seq Database

Predicted Gene MLOC_48327

Gene IDMLOC_48327
Source Contig contig_32140

Gene Data

|FPKM Values|
|CDS Structures|
|Gene Cluster Members|
|Homology to Models|

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MLOC_48327 FPKM values

FPKM by Treatment	FPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.

Treatment ID	Treatment Description	Rep 1 FPKM	Rep 2 FPKM	Rep 3 FPKM	Treatment FPKM
EMB	4-day embryos dissected from germinating grains	0.967358	0.832384	0.627585	0
LEA	Shoots from the seedlings (10 cm shoot stage)	2.18553	1.5522	1.97784	0
INF1	Young developing inflorescences (5mm)	2.74323	4.83808	4.93278	0
INF2	Developing inflorescences (1-1.5 cm)	7.65173	7.87509	4.95319	0
ROO	Roots from the seedlings (10 cm shoot stage)	0.801318	2.73963	2.76075	0
NOD	Developing tillers at six leaf stage, 3rd internode	3.67495	5.2144	8.36532	0
CAR5	Developing grain, bracts removed (5 DPA)	9.8804	4.99352	6.94855	0
CAR15	Developing grain, bracts removed (15 DPA)	4.68358	3.66346	4.48271	0

CDS Structure of MLOC_48327

Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by AK364404

Cluster member	Probe ID	FPKM by replicate	FPKM by treatment	Source Contig
AK364404	CUST_13716_PI427708083	None	None	None
MLOC_1185.1	None	Available	None	contig_110239 (Mapped)
MLOC_26913.1	None	Available	None	contig_1789633 (Mapped)
MLOC_29435.1	None	Available	None	contig_200588 (Mapped)
MLOC_30927.1	None	Available	None	contig_2140383 (Not mapped)
MLOC_31022.1	None	Available	Available	contig_214990 (Not mapped)
MLOC_31598.1	None	Available	None	contig_2204010 (Mapped)
MLOC_32861.1	None	Available	None	contig_232528 (Mapped)
MLOC_43458.2	None	Available	None	contig_270487 (Mapped)
MLOC_48327.1	None	Available	None	contig_32140 (Not mapped)
MLOC_55409.1	None	Available	None	contig_399404 (Not mapped)
MLOC_678.1	None	Available	None	contig_1049757 (Not mapped)
MLOC_74634.1	None	Available	None	contig_662344 (Not mapped)
MLOC_78888.1	None	Available	None	contig_823280 (Not mapped)

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP6	None	-	-	-	-	-
TAIR PP10	None	-	-	-	-	-