MLOC_48186 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.37814.035244.808916.2707
LEAShoots from the seedlings (10 cm shoot stage)2.153241.503870.3654451.29983
INF1Young developing inflorescences (5mm)8.1620114.812512.414514.5201
INF2Developing inflorescences (1-1.5 cm)9.8770210.83978.9082416.4681
ROORoots from the seedlings (10 cm shoot stage)4.175981.858824.861174.10188
NODDeveloping tillers at six leaf stage, 3rd internode0.2672790.1452590.4192290.686786
CAR5Developing grain, bracts removed (5 DPA)1.513452.142794.296463.81333
CAR15Developing grain, bracts removed (15 DPA)0.2988530.1694330.21730.863706



CDS Structure of MLOC_48186






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_48186.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_48186.1CUST_6798_PI427708083AvailableAvailablecontig_319183 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g17100.1 +2 9e-30 107 68/81 (84%) 13103.m02043 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT5G02560.1 +2 2e-28 103 67/81 (83%) | Symbols: HTA12 | histone H2A 12 | chr5:575437-576456 FORWARD LENGTH=153