MLOC_48103 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.540331.163733.553763.31513
LEAShoots from the seedlings (10 cm shoot stage)1.9726601.916851.8992
INF1Young developing inflorescences (5mm)4.534214.874714.850295.9588
INF2Developing inflorescences (1-1.5 cm)5.526993.761314.374198.80004
ROORoots from the seedlings (10 cm shoot stage)01.724283.320844.01948
NODDeveloping tillers at six leaf stage, 3rd internode0.4100890.2448240.411171.84467
CAR5Developing grain, bracts removed (5 DPA)1.43292.811423.556053.90468
CAR15Developing grain, bracts removed (15 DPA)0.4275080.7992310.2099012.55637



CDS Structure of MLOC_48103






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_48103.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_48103.2CUST_6786_PI427708083AvailableAvailablecontig_317581 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g02150.2 -2 1e-40 142 73/91 (80%) 13104.m00133 protein tRNA methyltransferase, putative, expressed
TAIR PP10 AT2G45730.1 -2 1e-29 110 53/77 (69%) eukaryotic initiation factor 3 gamma subunit family protein | chr2:18836519-18839123 REVERSE LENGTH=446